[BLAST_ANAWARE] recon on MC data

From: Chi Zhang (zhangchi@MIT.EDU)
Date: Fri Apr 23 2004 - 15:42:34 EDT

Hi, just checked in some changes to BlastLib2 and blastrc, blastrc.mc to
fix the bloody slow reconstruction for MC data. turned out some cleaning
up in stub level which caused loss of tracks was quite important in order
to keep the multiplicity down for MC data.

after the change, both 6 order and linear run much faster than before and
run at about same speed for Monte Carlo data.

Chi

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