Re: [BLAST_ANAWARE] ttl/ttr with v3_2 and head version

From: Chi Zhang (zhangchi@MIT.EDU)
Date: Tue Jul 06 2004 - 15:24:51 EDT


Hi Michael,

No idea. I v been using the head lrn and have ttl/ttr. the run I crunch
is 6442, a hydrogen run. The only thing I can think of is $BLAST_PARAM.
head of BlastLib2 does not work with v3.0 params 100%. set it to
~blast/cvs_v3.0/Blast_Param_dev. But I can't think of a reason to affect
ttl/ttr.

BTW, I crunched with a new set of time to distance, and I reached slightly
improved resolutions:
        P TH PH Z
left: 30(28) 0.9(1.2) 0.7(1.0) 1.9(3.2)
right: 28(35) 0.9(1.1)

numbers in () are with standard calibration used by blast online. These
are still very bad resolutions.

Chi

On Tue, 6 Jul 2004, Michael Kohl wrote:

> Hi Chi,
>
> when I crunch recent runs with new lrn from either ~blast/cvs_v3.2 or
> checked out from the head, I get no good ttl/ttr entries!
>
> Any ideas?
>
> Michael
>
>
>
>
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