Re: [BLAST_ANAWARE] D2 recrunch

From: Michael Kohl (kohlm@MIT.EDU)
Date: Sun Oct 03 2004 - 11:45:57 EDT


Hi Nik,

these runs are part of a re-recrunch list that I am lrd'ing on bud15 and
bud16, however slow (because of H2 recrunch) and in case of most of the
runs of this list the crunch job gets stuck (eternal loop) which I only
recognize after some time.

Regards,

  Michael

On Sun, 3 Oct 2004, Nikolas Meitanis wrote:

> Hello,
> It appears to me that several (if not many) of the D2 runs have not been
> successfully REcRrrunched. These are runs that didnt succeed in the
> first iteration of the recrunch last week and had to be crunched again.
>
> 7898 8494 8565 8570 8865 8916 9155 9287 9554
>
> I cannot find a tag for them in the v3_4_1 . Have they been placed
> anywhere else by any chance?
>
> Thanks,
> n
>
>
> Michael Kohl wrote:
>
> >Hello,
> >
> >whoever is in charge of maintaining the H2 auto-recruncher:
> >
> >>From the logfiles in ~elog/recrunch_log I see that until September 29 the
> >command "lrn +SQL" was used, correctly implying a query to database for
> >both calibrations and the correct electronics map. (=runs 6347-6909 =
> >40runs)
> >Since September 30 however, the command seems to have been "lrn" only.
> >Since the default in $BLAST_PARAM/blastrc still is to *not* query the
> >database for anything, neither the right time offsets nor (even worse) the
> >right electronics map was used, for 546(!) runs so far ....
> >
> >Please correct me if I'm wrong! Otherwise these 546 runs have to be
> >recrunched again.
> >
> >Regards,
> >
> > Michael
> >
> >
> >
> >
> >
>
>

-- 

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