[BLAST_ANAWARE] changes to BlastLib2, may affect analysis scripts

From: zhangchi (zhangchi@general.lns.mit.edu)
Date: Wed Apr 02 2003 - 00:25:39 EST

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Hi, I changed BlastLib2 and the changes will affect the semantics you use
to call some of the functionalities.

I constructed a data structure: index_set to: support sorting, adding and
erasing of Newton Tracks efficiently. For detail of the data structure,
please see the codes and the cvs log.

The sematics to access any of the Fit Tracks has changed. Namely from
fTracks[itrk] to fTracks(itrk): []->() !!!. lrn.C changed accordingly.

The change will allow us to sort the tracks by chi squared or any criteria
we deem appropriate and quickly remove "bad" tracks.

Chi

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