Re: [BLAST_ANAWARE] new monte carlo formalism

From: Simon Sirca (simon.sirca@fmf.uni-lj.si)
Date: Mon Sep 06 2004 - 04:21:37 EDT


On Fri, 3 Sep 2004, Chi Zhang wrote:

> Also about the use of computer resource.

Just a quick thought; has anyone run gprof over a typical DGen session
coupled to Monte Carlo to see where the true bottle-necks are? I would
love to see this. They might be trivial to eliminate. Alex Skabelin
removed such tight spots from a commercial code, speeding it up by
a factor of 10 (and thereby increased his salary by the same factor I guess :)

Simon

--
  Simon Sirca
  Dept of Physics, University of Ljubljana   Tel: +386 1 4766-574
  Jadranska 19                               Fax: +386 1 2517-281
  1000 Ljubljana, Slovenia                   



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